Ecology & biodiversity analysis

Ecology and biodiversity statistics that connect community patterns to ecological questions.

Analysis for ecological, environmental, microbiome, and biodiversity datasets, with emphasis on multivariate structure, diversity metrics, ordination, and clear interpretation of ecological results.

Ecological data

From species tables to interpretable community patterns

Ecological datasets often combine many taxa, environmental variables, groups, and sampling factors. The analysis needs to respect that structure.

Alpha diversity
Observed richness, Chao1, Shannon, Simpson, and related indices when appropriate.
Beta diversity & community composition
Distance-based approaches for comparing multivariate community structure.
Ordination
NMDS, PCA, RDA, and related approaches for visualizing and explaining multivariate patterns.
Environmental drivers
Relate community patterns to soil, climate, habitat, management, or other measured variables.
Common methods

Ecology & biodiversity toolkit

NMDSPERMANOVARDAPCAAlpha diversityBeta diversityBray-CurtisCluster analysisCommunity analysisEnvironmental gradients
How interpretation works

A significant p-value is not the whole ecological story

A useful analysis connects statistical evidence to effect size, explained variation, community structure, study design, and ecological meaning.

Question first

Define what differs, what predicts what, and which component of community structure is actually being tested.

Distance & design

Choose an appropriate dissimilarity and account for the sampling design rather than treating every observation as independent by default.

Interpretation

Report the statistical result together with the information needed to understand the magnitude and structure of the pattern.

Workflow

Typical ecological analysis workflow

1

Audit the community table and metadata

Check sample identifiers, taxonomy or feature structure, environmental variables, missingness, and grouping factors.

2

Define diversity and multivariate questions

Choose metrics and ordination or hypothesis-testing approaches that correspond to the biological question.

3

Run, diagnose, visualize, explain

Produce publication-ready figures and explain what the analysis supports, and what it does not.

Working with an ecology dataset?

Send the research question, a sample of the data or metadata, and any analysis already attempted. The first step is to determine the right analytical scope.

View the ecology gig